KOD One™ PCR Master Mix, 10 pack

Product#: TYB-KMM-101-10PK
$1,501.92
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TOYOBO · High-Fidelity PCR

KOD One™ PCR Master Mix, 10 pack

A 2× hot-start master mix powered by genetically modified KOD DNA polymerase (UKOD) and a new Elongation Accelerator — ultra-fast 5 sec/kb extension, ~80× higher fidelity than Taq, and superior amplification from crude, GC-rich, and tough templates.

Cat No.
TYB-KMM-101-10PK
UNSPSC Code
12352204
Packaging
10 pk x 1 mL × 5 (200 rxns, 50 µL)
Storage Temp.
−20°C (4°C for a month)
// Ships on Dry Ice

Try it first. A trial size (Cat No. TYB-KMM-101S, limit one per customer) is available so you can validate KOD One™ on your own tough templates before scaling up to 1-, 5-, or 10-pack quantities.

Description

KOD One™ PCR Master Mix and KOD One™ PCR Master Mix -Blue- are 2× PCR master mixes based on genetically modified KOD DNA polymerase (UKOD). The KOD One™ series enables fast PCR, with an extension time of 5 sec/kb by applying UKOD and a new Elongation Accelerator. In addition, these master mixes provide greater efficiency and elongation capabilities than conventional PCR enzymes. In particular, they show greater amplification success from crude specimens. Furthermore, these master mixes can be applied to amplify from templates containing uracils (dU) or using primers containing inosines (dI) and uracils (dU).

The KOD One™ series contains two types of anti-KOD DNA polymerase antibodies that inhibit the polymerase and 3′→5′ exonuclease activities, thus allowing for Hot Start PCR. These master mixes generate blunt-end PCR products because of the 3′→5′ exonuclease (proof-reading) activity of KOD DNA polymerase.

Features

Five reasons KOD One™ outperforms conventional PCR enzymes.

Fast

Amplifies targets under very short conditions — ≤1 kb: 1 sec; 1–10 kb: 5 sec/kb; >10 kb: 10 sec/kb. Cycling conditions can be set flexibly when amplifying various targets of different sizes.

Easy to Use

Contains all reaction components except primers and templates, giving high reproducibility by reducing pipetting steps. The -Blue- version includes a loading dye (BPB) for direct loading onto agarose gels.

High Fidelity

Exhibits approximately 80-fold higher fidelity than Taq DNA polymerase — advantageous for applications such as preparing long target amplicons for sequencing.

High Efficiency

Effective for amplification from crude samples (biological samples, foodstuffs, soil extract, etc.). Various samples or lysates can be used directly as templates.

Inosine (dI) / Uracil (dU) Compatible

Can use primers or templates containing inosines (dI) or uracils (dU), whereas conventional high-fidelity PCR enzymes cannot.

Details

Applications
Direct PCR · Colony PCR · Amplification of NGS libraries · Site-directed gene mutation
Source
E. coli strain carrying the cloned UKOD DNA polymerase gene
Storage Condition
Store at −20°C (4°C for a month)
Reactions
200 reactions, 50 µL total reaction volume

Components

Code No. Component Size
TYB-KMM-101-10PK KOD One™ PCR Master Mix 10 pack X (1 mL × 5)
Note: The reagents can be stored at 4°C for a month. For longer storage, keep the reagents at −20°C.

Application Data

Manufacturer performance data (TOYOBO).

Example 1
Fast PCR

Various targets were amplified with KOD One™ PCR Master Mix and KOD One™ PCR Master Mix -Blue- using ultra-fast cycling conditions. The KOD One™ series successfully amplified all targets.

KOD One PCR Master Mix ? Example 1: Fast PCR
Amplification of various targets under ultra-fast cycling conditions.
KOD One PCR Master Mix ? Example 1: Fast PCR
Reaction Mix
KOD One PCR Master Mix ? Example 1: Fast PCR
PCR cycle

Example 2
Amplification from cDNA

The inhibitory effect of RNA in cDNA was compared using various PCR enzymes. KOD One™ Master Mix was not susceptible to RNA inhibition and was able to amplify targets under high concentrations of cDNA.

KOD One PCR Master Mix ? Example 2: Amplification from cDNA
Amplification from cDNA at high RNA concentrations.
KOD One PCR Master Mix ? Example 2: Amplification from cDNA
Reaction Mix
KOD One PCR Master Mix ? Example 2: Amplification from cDNA
PCR cycle

Example 3
PCR error ratio

The error ratio of various PCR enzymes was compared by determining the sequences of amplicons from the human β-globin gene. The amplicons were cloned into the vector using TArget clone™ -Plus- (Code No. TAK-201) and the sequences were determined. KOD One™ PCR Master Mix and KOD One™ PCR Master Mix -Blue- showed excellent fidelity, with mutation frequencies approximately 80 times lower than Taq DNA polymerase.

KOD One PCR Master Mix ? Example 3: PCR error ratio
Mutation frequency comparison vs. Taq DNA polymerase.

Example 4
Amplification using degenerate primers, containing inosine (I)

2.8 kb fragments were amplified using degenerate primers containing inosine (I). KOD One™ PCR Master Mix was able to amplify these targets, whereas conventional high-fidelity PCR enzymes cannot.

KOD One PCR Master Mix ? Example 4: Amplification using degenerate primers, containing inosine (I)
Amplification with inosine-containing degenerate primers.
KOD One PCR Master Mix ? Example 4: Amplification using degenerate primers, containing inosine (I)
Reaction Mix
KOD One PCR Master Mix ? Example 4: Amplification using degenerate primers, containing inosine (I)
PCR cycle
Primer sequence
Fwd: ATGGTICARATHCCICARAAY
Rev: RTGIGCYTGRTCCCARTTYTC

Example 5
Amplification from crude samples

Amplification from whole blood and from mouse lysate were compared. KOD One™ PCR Master Mix amplified the targets efficiently.

KOD One PCR Master Mix ? Example 5: Amplification from crude samples
Amplification directly from whole blood and mouse lysate.
KOD One PCR Master Mix ? Example 5: Amplification from crude samples
Reaction Mix
KOD One PCR Master Mix ? Example 5: Amplification from crude samples
PCR cycle

Example 6
Amplification of NGS library — Minimal amplification bias

An NGS library of Thermus thermophilus genome (GC content 70%) was amplified using KOD One™ PCR Master Mix and another company’s product, and the amplified libraries were sequenced on an Illumina MiSeq. This examined the GC bias of the amplified libraries. Normalized coverages (blue plot) close to 1 indicate low bias. KOD One™ PCR Master Mix showed lower GC bias than the other company’s product.

KOD One PCR Master Mix ? Example 6: Amplification of NGS library ? Minimal amplification bias
GC bias plot: %GC of 100 bp windows (X axis) vs. normalized coverage (blue circles), %GC of reference (red line), and base quality at %GC (green line).
KOD One PCR Master Mix ? Example 6: Amplification of NGS library ? Minimal amplification bias
Reaction Mix
KOD One PCR Master Mix ? Example 6: Amplification of NGS library ? Minimal amplification bias
PCR cycle
Primer sequence
Fwd: AATGATACGGCGACCACCGAGATC
Rev: CAAGCAGAAGACGGCATACGAG

Please see below for library input amounts and cycle numbers. (The optimal number of cycles may vary by 1 to 3 cycles depending on sample type and template size distribution.)

Library input amount Number of cycles
1 µg 0–1
500 ng 1–2
100 ng 4–5
50 ng 5–6
10 ng 8–10
1 ng 13–15
0.25 ng 16–18

Compared to other products in PCR Master Mix

Third-party experimental data — head-to-head performance vs. competitor master mixes.

THIRD-PARTY DATA

KOD One is superior to Q5.

KOD One is superior to Q5 ? customer-provided comparison data
* Provided by a customer (Maryland, Dec. 2022)

(1) Greater than ten times better than ThermoFisher DreamTaq for High GC Content PCR

Do you have a high GC content or tough gene to amplify? KOD One High Fidelity PCR master mix is ten times better than DreamTaq (Thermo Fisher) for high GC content template (amplification of the PIPPA gene region). No band due to a really tough GC region? KOD One (product #TYB-KMM-101 or 201 series) is 10× superior to DreamTaq, generating that band for you from all high GC content regions.

High GC content PCR: Thermo Fisher DreamTaq vs. TOYOBO KOD One Mix (KMM-101)
Thermo Fisher’s DreamTaq vs. TOYOBO KOD One Mix (KMM-101) · PCR Master Mix (2×) comparison · Target: tough GC region of the PIPPA gene · Data provided by a customer from NICHD/NIH.

(2) Greater than ten times better than Invitrogen or ThermoFisher Platinum Taq (High Fidelity Fast PCR)

Wish to generate solid PCR bands? KOD One Master Mix (product #TYB-KMM-101 or 201 series) is more than ten times better than Invitrogen | Thermo Fisher Platinum Taq (amplification of the XTL1127 region). KOD One is an extremely effective enzyme that will amplify tough genes and DNA templates. Abundant PCR amplification allows you to load a small amount of PCR product and save PCR samples for later use.

High fidelity fast PCR: Invitrogen Platinum Taq / TF vs. TOYOBO KOD One Mix (KMM-101)
Invitrogen’s Platinum Taq / TF vs. TOYOBO KOD One Mix (KMM-101).

(3) Three times better than NEB OneTaq (Expression Analysis by PCR)

Want something better and stronger than NEB OneTaq? KOD One PCR master mix (product #TYB-KMM-101 or 201 series) is at least three times better than OneTaq for amplifying tough templates. Researchers confirm 3× superior amplification for A5 and B6 genes and make solid PCR bands. It is an excellent enzyme to amplify low-abundance genes and tough genomic regions.

Expression analysis by PCR: NEB OneTaq vs. TOYOBO KOD One Mix (KMM-101)
NEB’s OneTaq vs. TOYOBO KOD One Mix (KMM-101) · PCR performed under NEB protocol · Data provided by customers from NIDDK/NIH.

(4) 30% to 46% lower price than NEB Q5

Want to save budget? KOD One PCR master mix (product #TYB-KMM-101 or 201 series) will save you 50% compared to NEB Q5. Buying one unit saves near 30%. Buy 5-set bundles and save more than 35% compared to major brands in the market. Buy a 10-set bundle and the KOD One mix is near half price compared to other name brands. Price comparison data showed KOD One master mix is the top choice for high-fidelity PCR master mix and the biggest bang for the buck in the market.

Price comparison: KOD One PCR Master Mix vs. other companies
Save Money, Save Time, Better Result — Price comparison: PCR Master Mix — KOD One vs. other companies.

(5) Five times better GC-Rich Region gDNA PCR result than Takara GXL System or Clontech GXL System

Want to maximize PCR amplification in the tough template region? KOD One PCR master mix (product #TYB-KMM-101 or 201 series) amplifies five times better than the Takara GXL System. KOD One mix generates bands from tough templates with 3× superior amplification compared to Clontech GXL. KOD One mix is excellent for amplification of long amplicons (10Kb+), high GC-rich regions, low-expressed genes, and secondary-structure templates.

GC-rich region gDNA PCR: Takara GXL / Clontech GXL vs. TOYOBO KOD One Mix (KMM-101)
Takara GXL System / Clontech GXL System vs. TOYOBO KOD One Mix (KMM-101) · P = primer sets, C = water control · Data provided by customers from G.W. Univ.

(6) More than ten times better amplification from crude samples than other brands

High efficiency: excellent amplification from crude samples. Cannot generate a PCR band from a crude sample and unpurified templates? KOD will do it for you. KOD One PCR master mix (product #TYB-KMM-101 or 201 series) is an extremely efficient enzyme that can work on crude and dirty samples — more than ten times better than other major brands. With 10× superiority compared to other major brands and some optimization, generating a PCR band from crude samples can be done without much preparation.

Excellent amplification from crude samples: whole blood and mouse lysate, KOD One vs. competitors
Amplification from whole blood and from mouse lysate were compared. KOD One PCR Master Mix amplified the targets accurately, which competitor brands did not.

(7) 11 kb long range for all organisms with high fidelity (10Kb+ gDNA Long Range PCR)

25 µL Rx vol., 25–35 cycles, gDNA long-range PCR. Need a long-range PCR? 10 kb or more with minimum errors? KOD One PCR master mix (product #TYB-KMM-101 or 201 series) can provide greater than 10Kb and will satisfy all long-range PCR experiments. Long PCR works from bacteria to humans with difficult regions on DNA templates. KOD One is highly efficient in generating large-size PCR bands with minimal errors (1 error in 10 million base pairs).

10Kb+ gDNA long-range PCR with KOD One PCR Master Mix
(I) Data provided by a customer from NIAID/NIH · (II) Data provided by a customer from NIDDK/NIH.

(8) 80 times higher fidelity than Taq DNA polymerase and Top Class in the market

Want a top high-fidelity PCR enzyme and robust amplification of high GC content, long PCR, and crude samples with minimum errors? Look no further: KOD One PCR master mix (product #TYB-KMM-101 or 201 series) works above and beyond to give you a PCR band at the lowest price per reaction. It is the top-class high-fidelity PCR enzyme master mix in the market — 80 times higher fidelity than traditional Taq DNA polymerase, and the most robust PCR enzyme engineered to give you the PCR band you need.

80x higher fidelity than Taq DNA polymerase ? Diagnocine Toyobo KOD One
The error ratios of various PCR enzymes were compared for a human β-globin gene. The amplicons were cloned into the vector and sequences were determined. KOD One PCR Master Mix and KOD One PCR Master Mix -Blue- showed excellent fidelity. The mutation frequency was ~80 times lower than Taq DNA polymerase. Mutation frequency (10-5) = number of misincorporated bases / 100,000 bases.

(9) Ten times faster than traditional PCR enzymes (1kb per one-second extension)

Looking for a lightning-fast PCR enzyme? KOD One PCR master mix (product #TYB-KMM-101 or 201 series) amplifies ten times faster than traditional PCR enzyme mixes. 1 kb elongation per 1 second extension time gives you 10× faster PCR to shorten bench time and quickly see results. Shorten your PCR time for long-range amplification with minimum error — a superior, fast enzyme for amplicons of 10 kb and more, from all sample sources including crude preparations.

Ten times faster than traditional PCR enzymes with KOD One PCR Master Mix
Various targets were amplified with KOD One PCR Master Mix (1 sec for up to 1 kb; 5 sec per kb for 1 to 10 kb; and 10 sec per kb beyond 10 kb).

(10) More than ten times better amplification with RNase inhibitors

Need a robust PCR enzyme that tolerates RNase inhibitors? KOD One PCR master mix (product #TYB-KMM-101 or 201 series) is more than ten times better than other major brands at amplifying PCR bands with RNase inhibitors in the reaction. Samples with RNase inhibitors are no problem with the KOD enzyme mix — no band or weak band becomes a solid, bright PCR band on your gel. Minimum errors, high fidelity, large PCR bands, and lightning-fast amplification for all sample sources including crude samples. This next-generation high-fidelity PCR enzyme is engineered to amplify PCR bands from GC-rich regions and tough templates.

Minimum effect on amplification in presence of RNase inhibitors: KOD One vs. major competitor brands
Minimum effect on amplification in the presence of RNase inhibitors in the reaction mix. With Diagnocine Toyobo: lane 1 = 125 ng RNA equiv., 2 = 250 ng, 3 = 500 ng, *4 = 1,000 ng RNA equiv.; M = 1 kb DNA Ladder. The inhibitory effect of RNA in cDNA was compared using various PCR enzymes from major brands. KOD One Master Mix was not susceptible to RNA inhibition and can amplify targets with RNase inhibitors in the reaction. TOYOBO brand KOD One PCR Master Mix can amplify under 1 µg of cDNA with RNase inhibitors (*lane 4 in each case).

Ordering Information

KOD One™ PCR Master Mix — Cat No. list
Product Cat No. Size Order
KOD One™ PCR Master Mix, 1 pack TYB-KMM-101 (1 mL × 5) Order
KOD One™ PCR Master Mix, 5 pack TYB-KMM-101-5PK (1 mL × 5) × 5 Order
KOD One™ PCR Master Mix, 10 pack TYB-KMM-101-10PK (1 mL × 5) × 10 Current page
KOD One™ PCR Master Mix, Trial (Only 1 Per Customer) TYB-KMM-101S Trial size Order

Publications

Literature citing KOD One™ PCR Master Mix, summarized by Bioz.

BiozPowered by Bioz
1,732Citations
53Images
32Tables

References / Citations

  1. Okhovat M. et al. TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function. Nat Commun. 2023 Dec 7;14(1):8111.
  2. Melesio, J., Bonilauri, B., Li, A., Pang, P. D., Liao, R., Witteles, R. M., Wu, J. C., & Sallam, K. (2023). Generation of two induced pluripotent stem cell lines from hereditary amyloidosis patients with polyneuropathy carrying heterozygous transthyretin (TTR) mutation. Stem Cell Research, 74, 103265. https://doi.org/10.1016/j.scr.2023.103265
  3. Kojic, A., Kim, H., Guevara, J. V., Ravada, S., Sallam, K., & Wu, J. C. (2022). Generation of two induced pluripotent stem cell lines from dilated cardiomyopathy patients carrying heterozygous FLNC mutations. Stem Cell Research, 64, 102928. https://doi.org/10.1016/j.scr.2022.102928
  4. Yildirim, Z., Kojic, A., Yan, C. D., Wu, M. A., Vagelos, R., & Wu, J. C. (2022). Generation of two induced pluripotent stem cell lines from dilated cardiomyopathy patients caused by heterozygous mutations in the HCN4 gene. Stem Cell Research, 65, 102951. https://doi.org/10.1016/j.scr.2022.102951
  5. Zeng, W., Kong, X., Alamana, C., Liu, Y., Guzman, J., Pang, P. D., Day, J. W., & Wu, J. C. (2023). Generation of two induced pluripotent stem cell lines from spinal muscular atrophy type 1 patients carrying no functional copies of the SMN1 gene. Stem Cell Research, 69, 103095. https://doi.org/10.1016/j.scr.2023.103095
  6. Chen, Y. I., Caudal, A., Flores-Banuelos, A. G., Yan, C. D., Park, W. G., Viswanathan, M., & Wu, J. C. (2025). Generation of two induced pluripotent stem cell lines from breast cancer patients carrying BRCA1 mutations. Stem Cell Research, 86, 103716. https://doi.org/10.1016/j.scr.2025.103716
  7. Gao, J., Li, J., Xu, L., Yan, C. D., Knowles, J. W., & Wu, J. C. (2024). Generation of two familial hypercholesterolemia patient-specific induced pluripotent stem cell lines harboring heterozygous mutations in the LDLR gene. Stem Cell Research, 78, 103463. https://doi.org/10.1016/j.scr.2024.103463
  8. Bonilauri, B., Shin, H. S., Htet, M., Yan, C. D., Witteles, R. M., Sallam, K., & Wu, J. C. (2023). Generation of two induced pluripotent stem cell lines from patients with cardiac amyloidosis carrying heterozygous transthyretin (TTR) mutation. Stem Cell Research, 72, 103215. https://doi.org/10.1016/j.scr.2023.103215

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